Publications

2025

1. JASA

   Comments on “Data Fission: Splitting a Single Data Point” by James Leiner, Boyan Duan, Larry Wasserman, and Aaditya Ramdas

   Lijun Wang, and Hongyu Zhao

   Journal of the American Statistical Association, Apr 2025

   Bib DOI Julia

   @article{wangCommentsDataFission2025a,
     title = {Comments on ``{{Data Fission}}: {{Splitting}} a {{Single Data Point}}'' by {{James Leiner}}, {{Boyan Duan}}, {{Larry Wasserman}}, and {{Aaditya Ramdas}}},
     shorttitle = {Comments on ``{{Data Fission}}},
     author = {Wang, Lijun and Zhao, Hongyu},
     year = {2025},
     month = apr,
     journal = {Journal of the American Statistical Association},
     volume = {120},
     number = {549},
     pages = {176--177},
     publisher = {ASA Website},
     issn = {0162-1459},
     doi = {10.1080/01621459.2024.2412808},
     urldate = {2025-04-30},
     julia = {https://github.com/szcf-weiya/fission_vs_splitting},
   }

2. bioRxiv

   Knockoff Procedure Improves Causal Gene Identifications in Conditional Transcriptome-Wide Association Studies

   Xiangyu Zhang, Lijun Wang, Jia Zhao, and Hongyu Zhao

   bioRxiv, Feb 2025

   Bib DOI R Website

   @article{zhangKnockoffProcedureImproves2025,
     title = {Knockoff Procedure Improves Causal Gene Identifications in Conditional Transcriptome-Wide Association Studies},
     author = {Zhang, Xiangyu and Wang, Lijun and Zhao, Jia and Zhao, Hongyu},
     year = {2025},
     month = feb,
     journal = {bioRxiv},
     pages = {2025.02.05.636660},
     issn = {2692-8205},
     doi = {10.1101/2025.02.05.636660},
     langid = {english},
     pmcid = {PMC11838583},
     pmid = {39974930},
     r = {https://github.com/zxy0912/TWASKnockoff},
   }

2024

1. arXiv

   False Discovery Rate Control via Data Splitting for Testing-after-Clustering

   Lijun Wang, Yingxin Lin, and Hongyu Zhao

   Oct 2024

   arXiv Bib DOI Julia R Website

   @misc{wangFalseDiscoveryRate2024,
     title = {False {{Discovery Rate Control}} via {{Data Splitting}} for {{Testing-after-Clustering}}},
     author = {Wang, Lijun and Lin, Yingxin and Zhao, Hongyu},
     year = {2024},
     month = oct,
     number = {arXiv:2410.06451},
     eprint = {2410.06451},
     publisher = {arXiv},
     doi = {10.48550/arXiv.2410.06451},
     urldate = {2024-10-10},
     archiveprefix = {arXiv},
     r = {https://github.com/szcf-weiya/SplitClusterTest},
     julia = {https://github.com/szcf-weiya/SplitClusterTest.jl},
   }

2. NC

   Partitioning and Aggregating Cross-Tissue and Tissue-Specific Genetic Effects to Identify Gene-Trait Associations

   Shuang Song, Lijun Wang, Lin Hou, and Jun S. Liu

   Nature Communications, Jul 2024

   Bib DOI R Website

   @article{songPartitioningAggregatingCrosstissue2024,
     title = {Partitioning and Aggregating Cross-Tissue and Tissue-Specific Genetic Effects to Identify Gene-Trait Associations},
     author = {Song, Shuang and Wang, Lijun and Hou, Lin and Liu, Jun S.},
     year = {2024},
     month = jul,
     journal = {Nature Communications},
     volume = {15},
     number = {1},
     pages = {5769},
     issn = {2041-1723},
     doi = {10.1038/s41467-024-49924-4},
     urldate = {2024-07-10},
     copyright = {All rights reserved},
     langid = {english},
     r = {https://github.com/szcf-weiya/MTWAS},
   }

3. arXiv

   Decomposition with Monotone B-splines: Fitting and Testing

   Lijun Wang, Xiaodan Fan, Hongyu Zhao, and Jun S. Liu

   Jan 2024

   arXiv Bib Julia Website

   @misc{wangDecompositionMonotoneBsplines2024,
     title = {Decomposition with {{Monotone B-splines}}: {{Fitting}} and {{Testing}}},
     shorttitle = {Decomposition with {{Monotone B-splines}}},
     author = {Wang, Lijun and Fan, Xiaodan and Zhao, Hongyu and Liu, Jun S.},
     year = {2024},
     month = jan,
     number = {arXiv:2401.06383},
     eprint = {2401.06383},
     primaryclass = {stat},
     publisher = {arXiv},
     urldate = {2024-01-15},
     archiveprefix = {arXiv},
     copyright = {All rights reserved},
     julia = {https://github.com/szcf-weiya/MonotoneDecomposition.jl},
   }

4. JCGS

   Degrees of Freedom: Search Cost and Self-consistency

   Lijun Wang, Hongyu Zhao, and Xiaodan Fan

   Journal of Computational and Graphical Statistics, Sep 2024

   Bib DOI Julia R Website

   @article{wangDegreesFreedomSearch2024,
     title = {Degrees of {{Freedom}}: {{Search Cost}} and {{Self-consistency}}},
     shorttitle = {Degrees of {{Freedom}}},
     author = {Wang, Lijun and Zhao, Hongyu and Fan, Xiaodan},
     year = {2024},
     month = sep,
     journal = {Journal of Computational and Graphical Statistics},
     volume = {0},
     number = {0},
     pages = {1--23},
     publisher = {ASA Website},
     issn = {1061-8600},
     doi = {10.1080/10618600.2024.2388545},
     urldate = {2024-09-16},
     julia = {https://github.com/szcf-weiya/DegreesOfFreedom.jl},
     r = {https://github.com/szcf-weiya/earth.dof.patch},
   }

5. JCGS

   Monotone Cubic B-Splines with a Neural-Network Generator

   Lijun Wang, Xiaodan Fan, Huabai Li, and Jun S. and Liu

   Journal of Computational and Graphical Statistics, Nov 2024

   Bib DOI Julia Website

   @article{wangMonotoneCubicBSplines2024,
     title = {Monotone {{Cubic B-Splines}} with a {{Neural-Network Generator}}},
     author = {Wang, Lijun and Fan, Xiaodan and Li, Huabai and {and Liu}, Jun S.},
     year = {2024},
     month = nov,
     journal = {Journal of Computational and Graphical Statistics},
     volume = {0},
     number = {0},
     pages = {1--15},
     publisher = {ASA Website},
     issn = {1061-8600},
     doi = {10.1080/10618600.2024.2431070},
     urldate = {2025-03-26},
     julia = {https://github.com/szcf-weiya/MonotoneSplines.jl},
   }

6. ApJ

   Polarization Holes as an Indicator of Magnetic Field-Angular Momentum Alignment. I. Initial Tests

   Lijun Wang, Zhuo Cao, Xiaodan Fan, and Hua-bai Li

   The Astrophysical Journal, May 2024

   Bib DOI

   @article{wangPolarizationHolesIndicator2024a,
     title = {Polarization {{Holes}} as an {{Indicator}} of {{Magnetic Field}}-{{Angular Momentum Alignment}}. {{I}}. {{Initial Tests}}},
     author = {Wang, Lijun and Cao, Zhuo and Fan, Xiaodan and Li, Hua-bai},
     year = {2024},
     month = may,
     journal = {The Astrophysical Journal},
     volume = {966},
     number = {2},
     pages = {237},
     issn = {0004-637X, 1538-4357},
     doi = {10.3847/1538-4357/ad3734},
     urldate = {2024-07-11},
     copyright = {All rights reserved},
     langid = {english},
   }

7. bioRxiv

   Spatial Dynamics of Mammalian Brain Development and Neuroinflammation by Multimodal Tri-Omics Mapping

   Di Zhang, Leslie A. Rubio Rodríguez-Kirby, Yingxin Lin, Mengyi Song, Li Wang, Lijun Wang, Shigeaki Kanatani, Tony Jimenez-Beristain, Yonglong Dang, Mei Zhong, Petra Kukanja, Shaohui Wang, Xinyi Lisa Chen, Fu Gao, Dejiang Wang, Hang Xu, Xing Lou, Yang Liu, Jinmiao Chen, Nenad Sestan, Per Uhlén, Arnold Kriegstein, Hongyu Zhao, Gonçalo Castelo-Branco, and Rong Fan

   bioRxiv, Jul 2024

   Bib DOI Blog Website

   @article{zhangSpatialDynamicsMammalian2024,
     title = {Spatial Dynamics of Mammalian Brain Development and Neuroinflammation by Multimodal Tri-Omics Mapping},
     author = {Zhang, Di and {Rodr{\'i}guez-Kirby}, Leslie A. Rubio and Lin, Yingxin and Song, Mengyi and Wang, Li and Wang, Lijun and Kanatani, Shigeaki and {Jimenez-Beristain}, Tony and Dang, Yonglong and Zhong, Mei and Kukanja, Petra and Wang, Shaohui and Chen, Xinyi Lisa and Gao, Fu and Wang, Dejiang and Xu, Hang and Lou, Xing and Liu, Yang and Chen, Jinmiao and Sestan, Nenad and Uhl{\'e}n, Per and Kriegstein, Arnold and Zhao, Hongyu and {Castelo-Branco}, Gon{\c c}alo and Fan, Rong},
     year = {2024},
     month = jul,
     journal = {bioRxiv},
     pages = {2024.07.28.605493},
     doi = {10.1101/2024.07.28.605493},
     urldate = {2024-08-27},
     chapter = {New Results},
     copyright = {All rights reserved},
     langid = {english},
   }

8. Respir. Res.

   Clustering-Aided Prediction of Outcomes in Patients with Idiopathic Pulmonary Fibrosis

   Lijun Wang, Peitao Wu, Yi Liu, Divya C. Patel, Thomas B. Leonard, and Hongyu Zhao

   Respiratory Research, Oct 2024

   Bib DOI

   @article{wangClusteringaidedPredictionOutcomes2024,
     title = {Clustering-Aided Prediction of Outcomes in Patients with Idiopathic Pulmonary Fibrosis},
     author = {Wang, Lijun and Wu, Peitao and Liu, Yi and Patel, Divya C. and Leonard, Thomas B. and Zhao, Hongyu},
     year = {2024},
     month = oct,
     journal = {Respiratory Research},
     volume = {25},
     number = {1},
     pages = {383},
     issn = {1465-993X},
     doi = {10.1186/s12931-024-03015-6},
     urldate = {2024-10-23},
     langid = {english},
   }

2023

1. BMC Bioinfo

   Automatic Block-Wise Genotype-Phenotype Association Detection Based on Hidden Markov Model

   Jin Du, Chaojie Wang, Lijun Wang, Shanjun Mao, Bencong Zhu, Zheng Li, and Xiaodan Fan

   BMC Bioinformatics, Apr 2023

   Bib DOI

   @article{duAutomaticBlockwiseGenotypephenotype2023,
     title = {Automatic Block-Wise Genotype-Phenotype Association Detection Based on Hidden {{Markov}} Model},
     author = {Du, Jin and Wang, Chaojie and Wang, Lijun and Mao, Shanjun and Zhu, Bencong and Li, Zheng and Fan, Xiaodan},
     year = {2023},
     month = apr,
     journal = {BMC Bioinformatics},
     volume = {24},
     number = {1},
     pages = {138},
     issn = {1471-2105},
     doi = {10.1186/s12859-023-05265-5},
     copyright = {All rights reserved},
     langid = {english},
     pmcid = {PMC10082540},
     pmid = {37029361},
   }

2021

1. arXiv

   Appearance-Free Tripartite Matching for Multiple Object Tracking

   Lijun Wang, Yanting Zhu, Jue Shi, and Xiaodan Fan

   Aug 2021

   arXiv Bib DOI Julia

   @misc{wangAppearancefreeTripartiteMatching2021,
     title = {Appearance-Free {{Tripartite Matching}} for {{Multiple Object Tracking}}},
     author = {Wang, Lijun and Zhu, Yanting and Shi, Jue and Fan, Xiaodan},
     year = {2021},
     month = aug,
     number = {arXiv:2008.03628},
     eprint = {2008.03628},
     primaryclass = {cs, stat},
     publisher = {arXiv},
     doi = {10.48550/arXiv.2008.03628},
     urldate = {2023-09-21},
     archiveprefix = {arXiv},
     copyright = {All rights reserved},
     julia = {https://github.com/szcf-weiya/TriMatchMOT},
   }

2017

1. JIB

   A Generalized Approach for Measuring Relationships Among Genes

   Lijun Wang, Md Asif Ahsan, and Ming Chen

   Journal of Integrative Bioinformatics, Jul 2017

   Bib DOI

   @article{wangGeneralizedApproachMeasuring2017,
     title = {A {{Generalized Approach}} for {{Measuring Relationships Among Genes}}},
     author = {Wang, Lijun and Ahsan, Md Asif and Chen, Ming},
     year = {2017},
     month = jul,
     journal = {Journal of Integrative Bioinformatics},
     volume = {14},
     number = {3},
     publisher = {De Gruyter},
     doi = {10.1515/jib-2017-0026},
     urldate = {2020-06-18},
     chapter = {Journal of Integrative Bioinformatics},
     copyright = {All rights reserved},
     langid = {english},
   }