Data Splitting for Seurat object

Data Splitting for Seurat object

Usage

ds(
  sce,
  params1 = NULL,
  params2 = NULL,
  seed = NA,
  test.use = "t",
  signal_measurement = "tstat",
  test.from.raw = TRUE
)

Arguments

sce

A SingleCellExperiment object

params1

list of parameters to be passed to perform_clustering for the first half of the data splitting

params2

list of parameters to be passed to perform_clustering for the second half of the data splitting.

seed

random seed for reproducibility

test.use

The hypothesis testing for DE test. Possible choices: t, wilcox, poisson, and negbinom

signal_measurement

the signal measurement. Possible choices: the test statistic tstat, or the signed p-value pval

test.from.raw

whether to perform the testing on the original data without normalization or on the normalized data

Value

a vector of mirror statistics