Modified Seurat::GLMDETest by extending the output with statistics in addition to p-values

Modified Seurat::GLMDETest by extending the output with statistics in addition to p-values

Usage

myGLMDETest(
  data.use,
  cells.1,
  cells.2,
  min.cells = 3,
  latent.vars = NULL,
  test.use = NULL,
  verbose = TRUE
)

Arguments

data.use

Data to test

cells.1

Group 1 cells

cells.2

Group 2 cells

min.cells

Minimum number of cells threshold

latent.vars

Latent variables to test

test.use

parameterizes the glm

verbose

Print progress bar

Value

Returns a p-value ranked matrix of putative differentially expressed