Package index

All functions

create_pmatrix_from_terms()

Create matrix from select terms

demo

Demo original dataset

find.index()

match index

format_twas_dat()

Data preparation

impute.E()

Impute the list of expression matrix `E`

run_mtwas_easy()

Run association test with downloaded trained data

select.ct.eQTL()

Detect the cross-tissue eQTLs

select.ts.eQTL()

Select tissue-specific eQTLs

soda_model_imp_share()

Select cross-tissue via SODA

soda_model_imp_single()

Select tissue-specific via SODA

summary_stats

Demo summary statistics

twas.multi.trait()

Run association test for multiple traits

twas.res()

MTWAS main function

twas.single.trait()

An association test in a tissue-specific manner for a phenotype (trait).

twas_data

Datasets Demo TWAS data of three genes and two tissues