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Multiple data splitting

Source: R/split_cluster_test.R
mds.SingleCellExperiment.Rd

Multiple data splitting

Usage

# S3 method for class 'SingleCellExperiment'
mds(
  sce,
  ncores = 1,
  M = 10,
  q = 0.05,
  tied.method = "fair",
  sum_in_denom = TRUE,
  ...
)

Arguments

sce

A SingleCellExperiment object

ncores

If larger than 1, then compute in parallel with ncores cores.

M

The number of data splitting

q

The nominal FDR level (default: 0.05)

tied.method

The method for handling the tied values.

sum_in_denom

when calculating the inclusion rate, use the modified inclusion rate (TRUE) or the original inclusion rate (FALSE)

...

arguments passed to mds1 (or mds1_parallel)

Value

the selected relevant features